# biology/bcftools - The NetBSD Packages Collection

Tools for manipulating BCF and VCF variant call files

    BCFtools is a set of utilities that manipulate variant calls in the
    Variant Call Format (VCF) and its binary counterpart BCF. All
    commands work transparently with both VCFs and BCFs, both
    uncompressed and BGZF-compressed.

- Source version: `bcftools-1.21`
- Maintainer: bacon AT NetBSD.org
- Website: https://www.htslib.org/
- License: mit
- Package history: cvs, hg, git

## Build dependencies

pkgtools/mktools devel/automake devel/autoconf shells/bash devel/gmake lang/perl5 pkgtools/cwrappers

## Runtime dependencies

math/gsl biology/htslib lang/python313 lang/python313 math/gsl

## Binary packages

OS | Architecture | Version
--- | --- | ---
NetBSD 10.0 | aarch64 | bcftools-1.21.tgz
NetBSD 10.0 | aarch64 | bcftools-1.21.tgz
NetBSD 10.0 | aarch64eb | bcftools-1.21.tgz
NetBSD 10.0 | alpha | bcftools-1.21.tgz
NetBSD 10.0 | earmv6hf | bcftools-1.21.tgz
NetBSD 10.0 | earmv6hf | bcftools-1.21.tgz
NetBSD 10.0 | earmv7hf | bcftools-1.21.tgz
NetBSD 10.0 | earmv7hf | bcftools-1.21.tgz
NetBSD 10.0 | i386 | bcftools-1.21.tgz
NetBSD 10.0 | i386 | bcftools-1.21.tgz
NetBSD 10.0 | powerpc | bcftools-1.21.tgz
NetBSD 10.0 | powerpc | bcftools-1.21.tgz
NetBSD 10.0 | powerpc | bcftools-1.21.tgz
NetBSD 10.0 | x86_64 | bcftools-1.21.tgz
NetBSD 10.0 | x86_64 | bcftools-1.21.tgz
NetBSD 11.0 | aarch64 | bcftools-1.21.tgz
NetBSD 11.0 | aarch64 | bcftools-1.21.tgz
NetBSD 11.0 | aarch64eb | bcftools-1.21.tgz
NetBSD 11.0 | alpha | bcftools-1.21.tgz
NetBSD 11.0 | earmv6hf | bcftools-1.21.tgz
NetBSD 11.0 | earmv6hf | bcftools-1.21.tgz
NetBSD 11.0 | earmv7hf | bcftools-1.21.tgz
NetBSD 11.0 | earmv7hf | bcftools-1.21.tgz
NetBSD 11.0 | i386 | bcftools-1.21.tgz
NetBSD 11.0 | i386 | bcftools-1.21.tgz
NetBSD 11.0 | m68k | bcftools-1.21.tgz
NetBSD 11.0 | powerpc | bcftools-1.21.tgz
NetBSD 11.0 | riscv64 | bcftools-1.21.tgz
NetBSD 11.0 | x86_64 | bcftools-1.21.tgz
NetBSD 11.0 | x86_64 | bcftools-1.21.tgz
NetBSD 9.0 | earmv6hf | bcftools-1.21.tgz
NetBSD 9.0 | earmv6hf | bcftools-1.21.tgz
NetBSD 9.0 | earmv7hf | bcftools-1.21.tgz
NetBSD 9.0 | earmv7hf | bcftools-1.21.tgz
NetBSD 9.0 | i386 | bcftools-1.21.tgz
NetBSD 9.0 | i386 | bcftools-1.21.tgz
NetBSD 9.0 | x86_64 | bcftools-1.21.tgz
NetBSD 9.0 | x86_64 | bcftools-1.21.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

## Available build options

(none)

## Known vulnerabilities

(no vulnerabilities known)

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.