=> Bootstrap dependency digest>=20010302: found digest-20080510
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
===> Building for py26-Scientific-2.4.5nb2
(cd /scratch/math/py-Scientific/work/ScientificPython-2.4.5/ && /usr/bin/env NETCDF_PREFIX=/usr/pkg USETOOLS=no PTHREAD_CFLAGS=\ -pthread\  PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS= PTHREADBASE=/usr DL_CFLAGS=\ -pthread\  DL_LDFLAGS=\ -pthread DL_LIBS= PYTHON=/usr/pkg/bin/python2.6 CC=cc CFLAGS=-O2\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python2.6 CPPFLAGS=-I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python2.6 CXX=c++ CXXFLAGS=-O2\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python2.6 COMPILER_RPATH_FLAG=-Wl,-R F77=f77 FC=f77 FFLAGS=-O LANG=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib\ -L/usr/lib\ -Wl,-R/usr/lib\ -L/usr/pkg/lib/python2.6/config\ -Wl,-R/usr/pkg/lib/python2.6/config LINKER_RPATH_FLAG=-R PATH=/scratch/math/py-Scientific/work/.wrapper/bin:/scratch/math/py-Scientific/work/.buildlink/bin:/scratch/math/py-Scientific/work/.gcc/bin:/scratch/math/py-Scientific/work/.tools/bin:/usr/pkg/bin:/sbin:/usr/sbin:/bin:/usr/bin:/usr/pkg/sbin:/usr/pkg/bin:/usr/X11R7/bin:/usr/X11R6/bin:/usr/local/sbin:/usr/local/bin:/usr/pkg/bin:/usr/pkg/bin PREFIX=/usr/pkg PKG_SYSCONFDIR=/usr/pkg/etc CXXCPP=cpp HOME=/scratch/math/py-Scientific/work/.home CPP=cpp LINK_ALL_LIBGCC_HACK= LOCALBASE=/usr/pkg NO_WHOLE_ARCHIVE_FLAG=-Wl,--no-whole-archive WHOLE_ARCHIVE_FLAG=-Wl,--whole-archive X11BASE=/usr/pkg X11PREFIX=/usr/pkg PKGMANDIR=man MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 444 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 444 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 444 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 INSTALL_INFO= MAKEINFO=/scratch/math/py-Scientific/work/.tools/bin/makeinfo PKG_CONFIG= PKG_CONFIG_LIBDIR=/scratch/math/py-Scientific/work/.buildlink/lib/pkgconfig:/scratch/math/py-Scientific/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/scratch/math/py-Scientific/work/.pkg-config.log PKG_CONFIG_PATH= WRAPPER_DEBUG=no WRAPPER_UPDATE_CACHE=yes VIEWBASE=/usr/pkg /usr/pkg/bin/python2.6  setup.py build )
/usr/pkg/lib/python2.6/distutils/dist.py:250: UserWarning: 'licence' distribution option is deprecated; use 'license'
  warnings.warn(msg)
Found netCDF installation in  /usr/pkg
running build
running build_py
creating build
creating build/lib.netbsd-5.0_STABLE-amd64-2.6
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific
copying Scientific/DictWithDefault.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific
copying Scientific/Installation.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific
copying Scientific/Mathematica.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific
copying Scientific/NumberDict.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific
copying Scientific/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific
copying Scientific/indexing.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Functions
copying Scientific/Functions/FirstDerivatives.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Functions
copying Scientific/Functions/Derivatives.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Functions
copying Scientific/Functions/FindRoot.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Functions
copying Scientific/Functions/Interpolation.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Functions
copying Scientific/Functions/LeastSquares.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Functions
copying Scientific/Functions/Polynomial.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Functions
copying Scientific/Functions/Rational.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Functions
copying Scientific/Functions/Romberg.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Functions
copying Scientific/Functions/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Functions
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Geometry
copying Scientific/Geometry/Quaternion.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Geometry
copying Scientific/Geometry/Objects3D.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Geometry
copying Scientific/Geometry/TensorAnalysis.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Geometry
copying Scientific/Geometry/TensorModule.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Geometry
copying Scientific/Geometry/Transformation.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Geometry
copying Scientific/Geometry/VectorModule.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Geometry
copying Scientific/Geometry/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Geometry
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/IO
copying Scientific/IO/FortranFormat.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/IO
copying Scientific/IO/ArrayIO.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/IO
copying Scientific/IO/PDBExportFilters.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/IO
copying Scientific/IO/NetCDF.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/IO
copying Scientific/IO/PDB.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/IO
copying Scientific/IO/TextFile.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/IO
copying Scientific/IO/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/IO
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Physics
copying Scientific/Physics/PhysicalQuantities.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Physics
copying Scientific/Physics/Potential.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Physics
copying Scientific/Physics/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Physics
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Statistics
copying Scientific/Statistics/Histogram.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Statistics
copying Scientific/Statistics/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Statistics
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Signals
copying Scientific/Signals/Models.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Signals
copying Scientific/Signals/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Signals
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Threading
copying Scientific/Threading/TaskManager.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Threading
copying Scientific/Threading/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Threading
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/TkWidgets
copying Scientific/TkWidgets/TkPlotCanvas.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/TkWidgets
copying Scientific/TkWidgets/Utility.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/TkWidgets
copying Scientific/TkWidgets/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/TkWidgets
copying Scientific/TkWidgets/TkVisualizationCanvas.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/TkWidgets
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Visualization
copying Scientific/Visualization/VPython.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Visualization
copying Scientific/Visualization/Color.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Visualization
copying Scientific/Visualization/VMD.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Visualization
copying Scientific/Visualization/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Visualization
copying Scientific/Visualization/VRML.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Visualization
copying Scientific/Visualization/VRML2.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/Visualization
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/MPI
copying Scientific/MPI/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/MPI
copying Scientific/MPI/IO.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/MPI
copying Scientific/MPI/core.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/MPI
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/BSP
copying Scientific/BSP/Console.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/BSP
copying Scientific/BSP/IO.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/BSP
copying Scientific/BSP/__init__.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/BSP
copying Scientific/BSP/core.py -> build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/BSP
running build_ext
building 'Scientific_netcdf' extension
creating build/temp.netbsd-5.0_STABLE-amd64-2.6
creating build/temp.netbsd-5.0_STABLE-amd64-2.6/Src
cc -DNDEBUG -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python2.6 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python2.6 -fPIC -IInclude -I/usr/pkg/include -I/usr/pkg/include/python2.6 -c Src/Scientific_netcdf.c -o build/temp.netbsd-5.0_STABLE-amd64-2.6/Src/Scientific_netcdf.o
Src/Scientific_netcdf.c: In function 'PyNetCDFFile_Close':
Src/Scientific_netcdf.c:940: warning: passing argument 2 of 'PyDict_Next' from incompatible pointer type
Src/Scientific_netcdf.c: In function 'PyNetCDFVariableObject_subscript':
Src/Scientific_netcdf.c:1787: warning: passing argument 3 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c:1787: warning: passing argument 4 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c:1787: warning: passing argument 5 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c:1807: warning: passing argument 3 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c:1807: warning: passing argument 4 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c:1807: warning: passing argument 5 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c: In function 'PyNetCDFVariableObject_ass_subscript':
Src/Scientific_netcdf.c:1909: warning: passing argument 3 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c:1909: warning: passing argument 4 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c:1909: warning: passing argument 5 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c:1929: warning: passing argument 3 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c:1929: warning: passing argument 4 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c:1929: warning: passing argument 5 of 'PySlice_GetIndices' from incompatible pointer type
Src/Scientific_netcdf.c: At top level:
Src/Scientific_netcdf.c:1974: warning: initialization from incompatible pointer type
Src/Scientific_netcdf.c:1976: warning: 'intargfunc' is deprecated
Src/Scientific_netcdf.c:1976: warning: initialization from incompatible pointer type
Src/Scientific_netcdf.c:1977: warning: 'intargfunc' is deprecated
Src/Scientific_netcdf.c:1977: warning: initialization from incompatible pointer type
Src/Scientific_netcdf.c:1978: warning: 'intintargfunc' is deprecated
Src/Scientific_netcdf.c:1978: warning: initialization from incompatible pointer type
Src/Scientific_netcdf.c:1979: warning: initialization from incompatible pointer type
Src/Scientific_netcdf.c:1980: warning: initialization from incompatible pointer type
Src/Scientific_netcdf.c:1984: warning: initialization from incompatible pointer type
creating build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/netbsd5
cc -shared -L/usr/pkgsrc/lang/python26/work/Python-2.6.2 -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib/python2.6/config -Wl,-R/usr/pkg/lib/python2.6/config -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python2.6 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python2.6 build/temp.netbsd-5.0_STABLE-amd64-2.6/Src/Scientific_netcdf.o -L/usr/pkg/lib -R/usr/pkg/lib -lnetcdf -lpython2.6 -o build/lib.netbsd-5.0_STABLE-amd64-2.6/Scientific/netbsd5/Scientific_netcdf.so -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib/python2.6/config -Wl,-R/usr/pkg/lib/python2.6/config
=> Unwrapping files-to-be-installed.
/scratch/math/py-Scientific/work/.buildlink/lib/libpython2.6.so: warning: warning: tmpnam() possibly used unsafely, use mkstemp() or mkdtemp()
/scratch/math/py-Scientific/work/.buildlink/lib/libpython2.6.so: warning: warning: tempnam() possibly used unsafely, use mkstemp() or mkdtemp()
cmd =  mpicc   -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib/python2.6/config -Wl,-R/usr/pkg/lib/python2.6/config  -pthread  -Wl,--export-dynamic -o mpipython -I../../Include -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python2.6 -I/usr/pkg/include/python2.6 mpipython.c Scientific_mpi.c -L/usr/pkg/lib/python2.6/config -lmpich -lpython2.6 -lpthread  -lutil -lm
